Add dimensional reductions — addUmapData • SPATA

Adds or replaces dimensional reduction data. If the object contains several sample the sample-variable of the input data.frame denotes the sample belonging.

addUmapData(object, umap_df, overwrite = FALSE)

addTsneData(object, tsne_df, overwrite = FALSE)

Arguments

object	A valid spata-object.
umap_df	A data.frame containing the character variables barcodes, sample and the numeric variables umap1, umap2.
overwrite	Logical. Must be set to TRUE in order to overwrite already existing data.
tsne_df	A data.frame containing the character variables barcodes, sample and the numeric variables tsne1, tsne2.

Value

An updated spata-object.