Filter variables of a certain trend

Extracts the genes or gene sets that follow a desired trend.

filterTrends(atdf, limit = 5, trends = "all", variables_only = TRUE)

Arguments

atdf

An assessed trajectory data.frame (easily accessed via assessTrajectoryTrends()).
limit

Numeric value. The maximum area-under-the-curve value the trajectory-trend-assessment might have.
variables_only

Logical. If set to TRUE a character of variable-names is returned. If set to FALSE the filtered data.frame is returned.
trend

Character vector. The patterns of interest.

Value

A character vector of gene or gene-set names that follow the specified patterns to the specified degree.