gsdf.Rd
This data.frame contains all gene-sets SPATA offers by
default. If no other gene-set-data.frame path has been specified
in the argument gene_set_path
of the function initiateSpataObject_10X()
it will use this data.frame as the default for slot @used_genesets.
data(gsdf)
A data.frame with 936.495 rows and two variables.
Character. The gene set names that have to be separated by an underscore '_', which separates the gene-set's class belonging from the actual gene-set name.
Character. The genes that belong to the respective gene-set denoted as character values.
https://www.gsea-msigdb.org/gsea/index.jsp
Number of different gene-sets: 11654
Gene set classes:
BP.GO: Biological processes - gene ontology
CC.GO: Cellular componenents - gene-ontology
MF.GO: Molecular functions - gene-ontology
HM: Hallmark gene sets
BC: Biocarta gene sets
RCTM: Reactome gene sets