SPATA2 3.0.0

Reference
Installation
SPATAData
Tutorials
- Initiating a SPATA2 object
- Initiation & Preprocessing with individual data
- Initiation & Preprocessing with MERFISH data
- Initiation & Preprocessing with Visium data
- Initiation & Preprocessing with VisiumHD data
- Basic Manipulation of a SPATA2 object
- Adding Data to SPATA2 objects
- Platform Compatibility
- Molecular Variables
- Image Handling
- Spatial Segmentation
- Implemented Algorithms & Concepts
- Copy Number Variations
- Clustering
- Dimensional Reduction
- Differential Expression
- Gene Set Enrichment
- Spatial Measures
- Spatial Gradient Screening
- Creating Spatial Annotations
- Using Spatial Annotations
- Spatial Annotation Screening
- Creating Spatial Trajectories
- Spatial Trajectory Screening
- Visualization
- Surface Plotting
Newslog

Deprecated

getExpressionMatrix.Rd

Deprecated in favor of getProcessedMatrix().

getExpressionMatrix(object, ...)

Contents

Developed by Jan Kueckelhaus, Dieter-Henrik Heiland.

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