Obtain molecule coordinates

Extracts the molecule coordinates of a specfific assay.

getMoleculeCoordinates(
  object,
  molecules = NULL,
  assay_name = activeAssay(object)
)

Arguments

object

An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.

molecules

Character or NULL. If character, specifies the molecules of interest and the output data.frame is filtered accordingly.

assay_name

Only relevant if the SPATA2 object contains more than one assay: Denotes the assay of interest and thus the molecular modality to use. Defaults to the active assay as set by activateAssay().

Value

Data.frame with variables molecule, x_orig, x, y_orig, y.