getPixelScaleFactor.Rd
Extracts side length of pixel sides depending on the resolution of the chosen image.
getPixelScaleFactor(object, ...)
# S4 method for class 'SPATA2'
getPixelScaleFactor(
object,
unit,
img_name = activeImage(object),
switch = FALSE,
add_attr = TRUE,
verbose = NULL,
...
)
# S4 method for class 'SpatialData'
getPixelScaleFactor(
object,
unit,
img_name = activeImage(object),
switch = FALSE,
add_attr = TRUE,
verbose = NULL,
...
)
# S4 method for class 'HistoImage'
getPixelScaleFactor(
object,
unit,
switch = FALSE,
add_attr = TRUE,
verbose = TRUE,
...
)
An object of class SPATA2
or, in case of S4 generics,
objects of classes for which a method has been defined.
Used to absorb deprecated arguments or functions.
Character value. The SI-unit of interest. Determines the reference unit for the pixel size.
Character value. The name of the image of interest.
If NULL
, the active image is chosen by default. Either way, must
be one of getImageNames()
.
Logical value. If TRUE
, the unit of the output is switched.
See details for more.
Logical. If TRUE
, informative messages regarding
the computational progress will be printed.
(Warning messages will always be printed.)
A single numeric value with the unit defined in attribute unit.
If switch
is FALSE
, the default, the output is to be interpreted as
unit/pixel. E.g. with unit = 'um'
an output of 15 'um/px' means that under the current resolution
of the image height and width one pixel corresponds to 15 um in height and
width in the original tissue.
If switch
is TRUE
, the output is to be interpreted as pixel/unit. E.g.
an output value of 0.07 'px/um' means that under the current image resolution
one micrometer corresponds to 0.07 pixel in the image.