Run image processing pipeline

A wrapper around the image processing functions:

• identifyPixelContent()

• identifyTissueOutline()

• identifyBackgroundColor()

processImage(object, img_name = activeImage(object), verbose = NULL, ...)

Arguments

object

An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.

img_name

Character value. The name of the image of interest. If NULL, the active image is chosen by default. Either way, must be one of getImageNames().

verbose

Logical. If TRUE, informative messages regarding the computational progress will be printed.

(Warning messages will always be printed.)

...

Arguments passed to identifyPixelContent().

Value

The updated input object, containing the added, removed or computed results.