Read coordinate data.frames

Reads in coordinates data.frame from various platforms.

read_coords(...)

read_coords_merfish(dir_coords)

read_coords_slide_seq_v1(dir_coords)

read_coords_visium(dir_coords)

read_coords_xenium(dir_coords)

Arguments

dir_coords

Character value. Directory to the coordinates data.frame.

Value

Data.frame of at least five columns:

  • barcodes: Character. Unique identifier of each observation.

  • x_orig: Numeric. x-coordinates of the original input.

  • y_orig: Numeric. y-coordinates of the original input.

  • col: Integer. Column index.

  • row: Integer. Row index.