Remove spatial annotations — removeSpatialAnnotations • SPATA2

Removes spatial annotations from the SPATA2 object.

removeSpatialAnnotations(object, ids)

Arguments

object: An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
ids: Character vector. The IDs of the spatial annotations to remove.

Value

The updated input object, containing the added, removed or computed results.

Examples

library(SPATA2)

data("example_data")

object <- example_data$object_UKF313T_diet

getSpatAnnIds(object)
plotSpatialAnnotations(object)

# get IDs tagged with both 'necrotic' and 'compr'
ids_rm <- getSpatAnnIds(object, tags = c("necrotic", "compr"), test = "all")

print(ids_rm)

object <- removeSpatialAnnotations(object, ids = ids_rm)

plotSpatialAnnotations(object)