rotateAll.RdThe rotate*() family rotates the current image
or coordinates of spatial aspects or everything. See details
for more information.
NOTE: rotateImage() only rotates the image and lets everything else as
is. Only use it if you want to rotate the image because it is not aligned with
the spatial coordinates. If you want to rotate the image while maintaining
alignment with the spatial aspects in the SPATA2 object
use rotateAll()!
rotateAll(object, angle, clockwise = TRUE, verbose = NULL)
rotateImage(
object,
angle,
img_name = activeImage(object),
clockwise = TRUE,
...
)
rotateCoordinates(object, angle, clockwise = TRUE, verbose = NULL)
rotateCoordsDf(object, angle, clockwise = TRUE, verbose = NULL)
rotateTissueOutlineDf(object, angle, clockwise = TRUE, verbose = NULL)
rotateSpatialAnnotations(
object,
angle,
ids = getSpatAnnIds(object),
clockwise = TRUE,
verbose = NULL
)
rotateSpatialTrajectories(object, angle, clockwise = TRUE, verbose = NULL)An object of class SPATA2 or, in case of S4 generics,
objects of classes for which a method has been defined.
Numeric value. The angle by which the coordinates are rotated. Should range from 1-359.
Logical value. If TRUE, rotation is performed
in clockwise direction. If FALSE, the other way round.
Logical. If TRUE, informative messages regarding
the computational progress will be printed.
(Warning messages will always be printed.)
Character value. The name of the image of interest.
If NULL, the active image is chosen by default. Either way, must
be one of getImageNames().
Additional arguments given to give_feedback().
The rotate*() functions can be used to rotate the complete SPATA2
object content or to rotate single aspects.
rotateAll(): Rotates image as well as every single spatial aspect.
Always tracks the justification.
rotateImage(): Rotates the image.
rotateCoordinates(): Rotates the coordinates data.frame, spatial annotations
and spatial trajectories.
rotateCoordsDf(): Rotates the coordinates data.frame.
rotateSpatialAnnotations(): Rotates spatial annotations.
rotateSpatialTrajectories(): Rotates spatial trajectories.
flipAll(), scaleAll()