Obtain outlier detection results — getOutlierResults • cypro

These functions can be used to extract the results of the outlier detection algorithms.

getOutlierResults(object, method_outlier = NULL, check = TRUE)

getOutlierIds(object, method_outlier = NULL, check = FALSE, flatten = TRUE)

Arguments

object

object	A valid cypro object.
method_outlier	Character vector. Specifies the method/algorithm of interest. Use `validOutlierDetectionMethods()` to obtain all valid input options.

A valid cypro object.

method_outlier

Character vector. Specifies the method/algorithm of interest.

Use validOutlierDetectionMethods() to obtain all valid input options.

Value

getOutlierResults() returns a list in which each slot contains the results for a specific method. getOutlierIds() returns a character vector of cell ids containing all cell ids that have been detected as outliers by at least one method.