Visualize possible batch effects

Source: R/batch-effect-detection.R

Visualizes the distances of the median well profiles cmoputed by detectBatchEffects() in a not clustered heatmap.

plotBatchHeatmap(object, clrp = "milo", verbose = NULL, correlated = FALSE)

Arguments

object

A valid cypro object.
clrp

Character value. Specifies the color palette to be used to represent groups of discrete variables. Run validColorPalettes() to obtain valid input options.
verbose

Logical. If set to TRUE informative messages regarding the computational progress will be printed.

(Warning messages will always be printed.)
correlated

Logical value. If set to TRUE the correlation results of the distance matrix are used as input for the heatmap.

Value

A heatmap as output from pheatmap::pheatmap().