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SPATA2
3.1.3
Reference
Installation
SPATAData
Tutorials
Initiating a SPATA2 object
Initiation & Preprocessing with individual data
Initiation & Preprocessing with MERFISH data
Initiation & Preprocessing with Visium data
Initiation & Preprocessing with VisiumHD data
Basic Manipulation of a SPATA2 object
Adding Data to SPATA2 objects
Platform Compatibility
Molecular Variables
Image Handling
Spatial Segmentation
Implemented Algorithms & Concepts
Copy Number Variations
Clustering
Dimensional Reduction
Differential Expression
Gene Set Enrichment
Spatial Measures
Spatial Gradient Screening
Creating Spatial Annotations
Using Spatial Annotations
Spatial Annotation Screening
Creating Spatial Trajectories
Spatial Trajectory Screening
Visualization
Surface Plotting
Newslog
Articles
All vignettes
Adding Data to SPATA2 objects
Clustering
Copy Number Variations (CNV)
Creating Spatial Annotations
Spatial Trajectories
Differential Expression Analysis (DEA)
Dimensional reduction
Gene Set Enrichment Analysis
Image Handling
Individual Resolution in VisiumHD Data
Initiation of individual SPATA2 objects
Initiation & Preprocessing: MERFISH
Initiation & Preprocessing: VisiumHD
Initiation & Preprocessing: Visium
Initiation & Preprocessing Xenium
Installation
Molecular Variables
Newslog
Package Compatibility
Surface Plotting
SPATAData
Spatial Annotation Screening
Spatial Measures
Spatial Segmentation
Spatial Trajectory Screening
Using Spatial Annotations