SpatialGradientScreening
- ClassSpatialGradientScreening-class.Rd
S4 class that contains input for and output of spatial gradient
screening implementation spatialAnnotationScreening()
and spatialTrajectoryScreening()
.
The following classes are derivates of this class: SpatialAnnotationScreening
,
SpatialTrajectoryScreening
.
coordinates
data.frame. A data.frame as obtained by getCoordsDfSA()
or getCoordsDfST()
,
respectively, with the setup used for the screening.
models
data.frame. A data.frame in which columns correspond to the modeled gradients used for the model fitting.
qc
list. A named list that contains results from the quality control steps. Reserved list slots are:
cf Numeric value. The correction factor used to adjust the span.
est_R2 List. Results from estimating the overal R2 between noise and total variation.
zero_infl_vars Character vector. Names of variables that have been identified as zero inflated.
results
A named list that contains the screening results. Reserved list slots are:
significance Data frame with results from the identification of non-random gradients.
model_fits Data frame with results from gradient ~ model fits.
sample
Character value. The name of the SPATA2
object with which
the screening was conducted.
set_up
A list of parameters required to reproduce the set up of the screening.