The ImageAnnotationScreening - Class

S4 class that contains input for and output of the function imageAnnotationScreening().

Slots

angle_span

numeric. Vector of length two. Confines the area of interest by angle relative to the center of the image annotation.

binwidth

numeric. The value with which the polygon that encircles the image annotation is consecutively expanded via sf::st_buffer(),

coords

data.frame. Coordinates data.frame of the sample.

img_annotation

ImageAnnotation. The ImageAnnotation-object of the image annotation chosen for the screening.

info

list. Miscellaneous information.

method_padj

character. The method with which p-values were adjusted.

models

data.frame. The model data.frame that has been used for the screening.

n_bins_angle

numeric. Number of bins that were created anglewise.

n_bins_circle

numeric. Number of bins that were created circlewise.

results_primary

data.frame. Data.frame that contains the results of the model fitting per angle bin.

results

data.frame. Data.frame that contains the summary of all gene-model fits across all angle bins.

sample

character. The sample name.

summarize_with

character. Either 'mean' or 'median'.