Download raw Visium output

Downloads raw Visium10X output of samples as a .zip folder.

downloadRawData(
  sample_names,
  files = NULL,
  folder = base::getwd(),
  overwrite = FALSE,
  in_shiny = FALSE,
  verbose = TRUE,
  ...
)

Arguments

sample_names

Character vector. The sample names of the data to be downloaded. Use validSampleNames() to obtain all valid input options.

files

Character vector or NULL. Specifies the file names under which the spata objects are saved. If character, the input must be of the same length as the input for argument sample_names. If NULL, the files are named according to the sample name.

folder

Character value. If character, specifies the output folder in which the spata object is saved. Defaults to the working directory.

overwrite

Logical. Must be set to TRUE if file directories under which downloaded files are about to be saved already exist.

verbose

Logical. If set to TRUE informative messages regarding the computational progress will be printed.

(Warning messages will always be printed.)

...

Used to absorb deprecated arguments or functions.

Value

An invisible TRUE.

Note

Imported from the package SPATAData.