Obtain image directories

Extracts image directories known to the SPATA2 object.

getImageDir(object, name)

getImageDirDefault(object, fdb_fn = "warning", check = FALSE, ...)

getImageDirectories(object)

getImageDirHighres(object, fdb_fn = "warning", check = FALSE, ...)

getImageDirLowres(object, fdb_fn = "warning", check = FALSE)

Arguments

object

An object of class spata2.

name

Character value. The name of the image of interest. Should be one of Get

check

Logical value. If TRUE, it is checked if the file actually exists.

...

Used to absorb deprecated arguments or functions.

Value

Character vector.

Details

getImageDirectories() returns all image directories known to the SPATA2 object. getImageDirLowres(), getImageDirHighres() and getImageDirDefault() return the directories of the respective slot of the HistologyImaging object. getImageDir() extracts specific directories that were set with setImageDir() by name.

See also

setImageDir() to set specific image directories. loadImage(), loadImageHighres(), loadImageLowres(), loadImageDefault() to exchange images.