Plot overview of S4 objects

Assigns every numeric variable to the model it fitted best against and plots the p-value of the fit against the fit evaluation.

plotOverview(object, ...)

# S4 method for ImageAnnotationScreening
plotOverview(
  object,
  eval = "ias_score",
  pval = "p_value_mean_adjusted",
  pt_alpha = 0.75,
  pt_color = "black",
  pt_size = 1,
  label_vars = NULL,
  label_alpha = 0.9,
  label_color = "black",
  label_size = 2,
  model_subset = NULL,
  nrow = NULL,
  ncol = NULL,
  ...
)

# S4 method for SpatialTrajectoryScreening
plotOverview(
  object,
  eval = "sts_score",
  pval = "p_value",
  pt_alpha = 0.75,
  pt_color = "black",
  pt_size = 1,
  label_vars = NULL,
  label_alpha = 0.9,
  label_color = "black",
  label_size = 2,
  model_subset = NULL,
  model_remove = NULL,
  nrow = NULL,
  ncol = NULL,
  ...
)

Arguments

object

An object of class spata2.

...

Used to absorb deprecated arguments or functions.

eval

Character value. The variable to use for the x-axis.

pval

Character value. The variable to use for the y-axis.

pt_alpha

Numeric value. Specifies the degree of transparency of all points.

pt_size

Numeric value. Specifies the size of all points.

label_vars

Character value, numeric value or NULL. Useful to highlight the exact position/evalation of variables.

If character, specifies the variables that are labeled. If numeric, specifies the top n of variables that are labeled. If NULL, ignored.

nrow, ncol

Numeric values or NULL. Used to arrange multiple plots.